Curator Dashboard

An integrated software library for vector classification, regression and distribution estimation. It supports multi-class classification. LIBSVM provides a simple interface where users can easily link it with their own programs. Main features of LIBSVM include: * Different Support Vector Machine (SVM) formulations * Efficient multi-class classification * Cross validation for model selection * Probability estimates * Various kernels (including precomputed kernel matrix) * Weighted SVM for unbalanced data * Both C++ and Java sources * GUI demonstrating SVM classification and regression * Python, R, MATLAB, Perl, Ruby, Weka, Common LISP, CLISP, Haskell, OCaml, LabVIEW, and PHP interfaces. C# .NET code and CUDA extension is available. * It''s also included in some data mining environments: RapidMiner, PCP, and LIONsolver. * Automatic model selection which can generate contour of cross valiation accuracy.

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• SciCrunch
• 10 years ago - by Anonymous

Comprehensive hierarchical controlled vocabulary for human disease representation.Open source ontology for integration of biomedical data associated with human disease. Disease Ontology database represents comprehensive knowledge base of inherited, developmental and acquired human diseases.

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• SciCrunch
• 14 years ago - by Anonymous

Ontology that defines hierarchical display of different rat strains as derived from parental strains. Ontology Browser allows to retrieve all genes, QTLs, strains and homologs annotated to particular term. Covers all types of biological pathways including altered and disease pathways, and to capture relationships between them within hierarchical structure. Five nodes of ontology include classic metabolic, regulatory, signaling, drug and disease pathways. Ontology allows for standardized annotation of rat. Serves as vehicle to connect between genes and ontology reports, between reports and interactive pathway diagrams, between pathways that directly connect to one another within diagram or between pathways that in some fashion are globally related in pathway suites and suite networks.

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• SciCrunch
• 10 years ago - by Anonymous

Portal provides list of software resources. LONI is leader in development of advanced computational algorithms and software for comprehensive and quantitative mapping of brain structure and function. Aims to encourage communication between users and LONI software engineers in order to improve effectiveness.

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• SciCrunch
• 14 years ago - by Anonymous

2012 workshop to establish a Central Resource of Data from Genome Sequencing Projects. The workshop addressed the challenges to aggregating and analyzing data sets from genome sequencing studies, such as: * Data sets being generally hard to access. * Data residing in various databases. * Variant and exposure/phenotype data not being comparable across studies. Participants in the workshop discussed options for dealing with these challenges, along with their costs and tradeoffs. Videos and accompanying slides from the workshop are available. Also available as a video playlist on GenomeTV

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• SciCrunch
• 11 years ago - by Anonymous

A database which provides a comprehensive set of functional annotation tools for investigators to understand biological meaning behind large list of genes. For any given gene list, DAVID tools are able to perform a variety of actions such as identifying enriched biological themes (particularly GO terms), discovering enriched functional-related gene groups, clustering redundant annotation terms, and visualizing genes on BioCarta and KEGG pathway maps.

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• SciCrunch
• 13 years ago - by Anonymous

Contract Research Org. specializing in custom protein analysis. Services Provided include SDS PAGE analysis, Western Blotting, Mass Spectrometry, protein staining ( silver,coomassie) for academia, federal institutions and industry.

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• SciCrunch
• 14 years ago - by Anonymous

eGOn is a web-based tool for interpreting and statistical analysis of genomic data or other interesting gene sets using Gene Ontology. eGOn is a graphical, interactive data mining tool. It associates user input reporter lists with GO terms and visualizes such GO terms as a hierarchical tree. Users can manipulate the tree output by various means. Significantly important GO terms resulted from a statistical test can be reported. All related information is exportable. Key features: - User friendly web-based interface and free of charge for academic users - Database storage of reporter lists - Manage submitted reporter lists in folders and sharing opportunities of reporter lists. - Enable filtering on GO evidence codes - Regularly updates of GO and gene annotation data - Fully expandable trees for browsing the GO hierarchy - Direct link to the NTNU Annotation Database for gene annotation information - Possible to add user defined GO annotations - Several statistic testes for analyses within and between reporter lists, indicating GO terms with relatively enriched gene numbers and suggesting biological areas that warrant further study. Result report views with statistical significant GO terms. - Results can be exported in txt, xls or XML format Sponsors: eGOn is developed by the Norwegian Microarray Consortium (NMC) and Department of Cancer Research and Molecular Medicine at Norwegian University of Science and Technology (NTNU).

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• SciCrunch
• 14 years ago - by Anonymous

Provides informationa about Genome of California Purple Sea Urchin, one species (Strongylocentrotus purpuratus) of which has been sequenced and annotated by Sea Urchin Genome Sequencing Consortium led by HGSC. Reports sequence and analysis of genome of sea urchin Strongylocentrotus purpuratus, a model for developmental and systems biology.

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• SciCrunch
• 14 years ago - by Anonymous

Spinal Research committed to funding international research into cure for spinal cord paralysis. Charity that funds medical research for treating and curing spinal cord paralysis. Supports basic science, clinical research and funds PhD students. ISRT also hosts Annual Network Meetings.

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• SciCrunch
• 14 years ago - by Anonymous

Software package for using multi locus genotype data to investigate population structure. Used for inferring presence of distinct populations, assigning individuals to populations, studying hybrid zones, identifying migrants and admixed individuals, and estimating population allele frequencies in situations where many individuals are migrants or admixed. Can be applied to most of commonly used genetic markers, including SNPS, microsatellites, RFLPs and Amplified Fragment Length Polymorphisms.

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• SciCrunch
• 11 years ago - by Anonymous

Integrated software system for storing, managing, analyzing, and querying biological pathways at different levels of genetic, molecular, biochemical and organismal detail. At the computational level, PathCase allows users to visualize pathways in multiple abstraction levels, and to pose predetermined as well as ad hoc queries using a graphical user interface.

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• SciCrunch
• 14 years ago - by Anonymous

Image processing and analysis software.

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• SciCrunch
• 10 years ago - by Anonymous

A U.S. organization which funds Parkinson's disease research and provides materials and services to patients. PDF funds research through: research centers at major universities; early-career investigators that devote their talents to the study of Parkinsons; funding independent investigators through the International Research Grants Program; and collaboration with other organizations on innovative projects.

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• SciCrunch
• 11 years ago - by Anonymous

Commercial antibody supplier. Imgenex has merged with Novus Biologicals.

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• SciCrunch
• 12 years ago - by Anonymous

Resource that discusses MNI brain, and the difference between the MNI brain and the brain in the Talairach atlas. Approaches to converting MNI coordinates to Talairach coordinates and a few other methods for locating your activation are also presented.Matlab function that transforms MNI coordinates to Talaraich coordinates. The inverse function, tal2mni is also available.

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• SciCrunch
• 10 years ago - by Anonymous

Probabilistic reference system for human brain, including tools to establish this reference system for structural and functional anatomy on both macroscopic (in vivo) and microscopic (post mortem) levels. Project has expanded neuroinformatics tools for data sharing and created Conforming Site System that allows laboratories worldwide to contribute data to evolving atlas. Through implementation of ICBM data sharing policy space, they are fostering data exchange while still providing for scientific credit assignment and subject confidentiality.ICBM atlas collection consists of ICBM Template, tool developed to provide reference that includes both set of coordinates and associated anatomical labels; the ICBM 452 T1 atlas, average of T1-weighted MRIs of normal young adult brains, ICBM probabilistic atlases, and Cytoarchitectonic Atlas. ICBM Subject Database is web-based database infrastructure that simplifies image dataset collection, organization and dissemination. Authorized users may view representations of data and form collections of datasets that can be downloaded or fed directly into Pipeline environment for distributed processing and analysis.

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• SciCrunch
• 14 years ago - by Anonymous

A desktop application for the analysis, visualization and data-mining of large-scale genomic data. It is a versatile microarray tool, incorporating sophisticated algorithms for clustering, visualization, classification, statistical analysis and biological theme discovery. MeV generates informative and interrelated displays of expression and annotation data from single or multiple experiments. A huge array of alrogithms are included in MeV modules, and are available at a button-click, such as K-means clustering, Hierarchical clustering, t-Tests, Significance Analysis of Microarrays, Gene Set Enrichment Analysis, and EASE. Extensive documentation is available for helping new users get started with MeV. A Quickstart Guide provides the tutorial a brand new person will need to get their first dataset loaded and displayed in the program. Returning MEV users will want to check out the release notes to see what new features are available in the latest versions of the program. Tutorials have been written about several of its more involved features.

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• SciCrunch
• 14 years ago - by Anonymous

Curated database of known (published) gene lesions responsible for human inherited disease.

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• SciCrunch
• 11 years ago - by Anonymous

Platform to promote studies on dynamic principles of brain functions through unifying experimental and computational approaches in cellular, local circuit, global network and behavioral levels. Provides services such as data sets, popular research findings and articles and current developments in field. This site has been archived since FY2019 and is no longer updated.

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• SciCrunch
• 14 years ago - by Anonymous