Curator Dashboard

Software wrapper on MongoDB Python driver that enables to query encrypted data. Enables to store and query encrypted data on database.

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• RRID
• 1 month ago - submitted by Edyta Vieth

Database system that can process SQL queries over encrypted data. Protecting confidentiality with encrypted query processing.

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• RRID
• 1 month ago - submitted by Edyta Vieth

Software framework for Encrypted Machine Learning in TensorFlow. Bridge between TensorFlow and Microsoft SEAL library. TF Encrypted aims to make privacy-preserving machine learning readily available, without requiring expertise in cryptography, distributed systems, or high performance computing.

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• RRID
• 1 month ago - submitted by Edyta Vieth

Software privacy-preserving framework based on TensorFlow. Integrates with mainstream privacy-preserving computation technologies, including cryptography, federated learning and trusted execution environment. Used to provide privacy-preserving solutions for artificial intelligence without requiring expertise in cryptography, federated learning and trusted execution environment. Rosetta reuses the APIs of TensorFlow and allows to transfer traditional TensorFlow codes into a privacy-preserving manner with minimal changes.

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• RRID
• 1 month ago - submitted by Edyta Vieth

Web application for scheduling meetings using lattigo. Program for Lattigo homomorphic encryption library.

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• RRID
• 1 month ago - submitted by Edyta Vieth

Software Geo-fencing demo application based on Paillier scheme. Used for testing out homomorphic encryption.

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• RRID
• 1 month ago - submitted by Edyta Vieth

Imaging system for both fluorescent and bioluminescent imaging in vivo. Lumina Series III platform offers full spectrum of wavelengths to perform almost any in vivo optical application with tunability of 20 nm. The system includes highly sensitive CCD camera, light-tight imaging chamber and complete automation and analysis capabilities. As optical imaging platform for in vivo analysis, IVIS systems include range of practical accessories developed through experience in research laboratories worldwide.

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• RRID
• 1 month ago - by Anonymous

Web interactive browser to visualize data and perform gene set enrichment analysis along with gene and SNP lookup. Web interface used to query STARNET datasets and downstream analysis which includes RNAseq from 7 tissues: blood, free internal mammary artery (MAM), atherosclerotic aortic root (AOR), subcutaneous fat (SF), visceral abdominal fat (VAF), skeletal muscle (SKLM), and liver (LIV). Paired SNP genotyping data is included and utilized for tissue expression quantitative trait loci (eQTL), CAD heritability (H2), co-expression networks and gene regulatory networks.

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• RRID
• 1 month ago - by Anonymous

Core provides infrastructure, disease modelling and compound screening expertise, to facilitate translation of basic scientific discoveries into tangible hit drug candidates. Platform acts as interface between fundamental biomedical research and high-standard drug discovery.

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• SciCrunch
• 1 month ago - submitted by Bruno F.R. Santos

Software Python package for analysis and visualization of spatial transcriptomics data. Framework to spatially and quantitatively profile the cellular neighborhood organized iTME.

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• RRID
• 1 month ago - submitted by Nancy Liu

Collection of spatial transcriptomics data of mouse CT26 sample generated by stereo-seq technology.

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• RRID
• 1 month ago - submitted by Nancy Liu

Software Python tool for detection of m6A from direct RNA-Seq data. Leverages multiple instance learning framework to detect m6a modifications from Nanopore Direct RNA Sequencing data.

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• dkNET
• 1 month ago - submitted by Shuai C

Software tool for long read based human genomic structural variation detection. Collects signatures of various types of SVs and employs clustering-and-refinement method to analyze signatures to implement sensitive SV detection.cuteSV2 is upgraded version of cuteSV.

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• dkNET
• 1 month ago - submitted by Shuai C

Software tool to fix base errors SNV/Indel in genome generated by noisy reads. Used to correct error bases in reference genome.

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• dkNET
• 1 month ago - submitted by Shuai C

Core facility within Lineberger Comprehensive Cancer Center that performs sample processing for the molecular, pathologic, and genomic characterization of patient-derived specimens using high-end instrumentation and state-of-the-art methods. Service offerings include nucleic acid extraction, gene expression profiling, spatial genomics, next-generation sequencing library preparation, and high-throughput sequencing. Protocols leverage the reproducibility and reliability of automated instrumentation to minimize batch effects and processing errors (e.g. sample swaps). These workflows have been continuously optimized over the last decade, with a sample-to-answer historic success rate of ~90% for the >15,000 FFPE samples TGL has processed.

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• SciCrunch
• 1 month ago - submitted by Edyta Vieth

Core provides collection of obstetric biological materials from prenatal visits through delivery along with annotated clinical information. In addition to specimen access, MOMI staff can provide study design assistance as needed.

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• SciCrunch
• 1 month ago - submitted by Edyta Vieth

Pitt Biospecimen Core provides human sample procurement in multiple UPMC hospitals across Pittsburgh. Standard operating procedures for procurement and processing are developed for each project in partnership with each study's principal investigator. A rigorous quality assurance program ensures SOP compliance. In addition to specimen banking and pathology consultation, research histology services by expert histology specialists are also available.

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• SciCrunch
• 1 month ago - submitted by Edyta Vieth

Bioinformatics Core Facility at the John G. Rangos Sr. Research Center provides bioinformatics as well as biostatistics services across a wide range of disease domains. The next-generation sequencing data analysis includes, but is not limited to, whole genome-, whole exome-, bulk and single cell epigenome-, bulk and single cell transcriptome, spatial transcriptome, microbiome, metabolome, proteome and lipidome data analysis. The facility specializes in T-, and B- cell repertoire data analysis, multi-omics initiatives, and multimodal analysis. Shiny dashboard and other web application development is also supported.

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• SciCrunch
• 1 month ago - submitted by Edyta Vieth

Provides expertise and research infrastructure across four key Cores of Biostatistics, Data Management and Information Systems, Qualitative Analysis, and Data Coordination.

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• SciCrunch
• 1 month ago - submitted by Edyta Vieth

Health Sciences Research Data Center is HIPAA compliant secure computing environment where study teams can store data and do analytics from anywhere with internet access. Teams work in Windows virtual desktop with memory, storage, and computing power dedicated to each user. Knowledgeable facility staff can provide data management, help with regulatory documents like DUAs, maintain systems compliance, and custom application development.

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• SciCrunch
• 1 month ago - submitted by Edyta Vieth