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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
Microscope that enables bright field and fluorescence imaging options.
Proper citation: Leica DMRE Fluorescence Microscope (RRID:SCR_000011) Copy
https://www.bruker.com/de/products-and-solutions/preclinical-imaging/mri/BioSpec3T.html
Bruker BioSpec preclinical MRI equipment at translational field of 3 Tesla, extends the range of multi-purpose, preclinical MRI and MRS systems in compact, easy to site footprint.
Proper citation: Bruker BioSpec 3T (RRID:SCR_025302) Copy
Compact stereotaxic instrument designed for use with knock-out and transgenic mice. Instrument includes 100 micron, 3-axes left-hand manipulator arm, mouse snout clamp and tooth bar, dual-sided ear bars, and corner clamp probe holder. Stoelting’s Motorized Stereotaxic Manipulator Arms are designed for fast, accurate positioning during stereotaxic surgery. Motorized manipulator arms employ touchscreen display for easy-to-control movement of each axis. Manual movement is available anytime. Optional Drill feature available.
Proper citation: Stoelting Motorized Mouse Stereotaxic Instrument (RRID:SCR_025303) Copy
http://www.osmicenterprises.com
A computerized, odor delivery device that can be used for basic research applications including mapping olfactory centers, cognitive / learning research, neuro-marketing among other uses. Additional products including tests for odor threshold, odor identification, odor discrimination and odor memory.
Proper citation: OEI fMRI compatible olfactometer (RRID:SCR_002507) Copy
http://www.bioconductor.org/packages/release/bioc/html/ReQON.html
Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.
Proper citation: ReQON (RRID:SCR_000075) Copy
http://www.iro.umontreal.ca/~csuros/quadgt/
Software package for calling single-nucleotide variants in four sequenced genomes comprising a normal-tumor pair and the two parents. Genotypes are inferred using a joint model of parental variant frequencies, de novo germline mutations, and somatic mutations. The model quantifies the descent-by-modification relationships between the unknown genotypes by using a set of parameters in a Bayesian inference setting. Note that you can use it on any subset of the four related genomes, including parent-offspring trios, and normal-tumor pairs without parental samples.
Proper citation: QuadGT (RRID:SCR_000073) Copy
A free online service to easily create and share webpages.
Proper citation: Google Sites (RRID:SCR_000112) Copy
http://soap.genomics.org.cn/soapfuse.html
THIS RESOURCE IS NO LONGER IN SERVICE.Documented on August 23,2022. An open source tool developed for genome-wide detection of fusion transcripts from human being paired-end RNA-Seq data. This tool is a part of a larger set of tools to efficiently align oligonucleotides onto reference sequences .
Proper citation: SOAPfuse (RRID:SCR_000078) Copy
A supplier of cancer and infectious disease diagnostic reagents. The company also provides services such as tissue-based and molecular diagnostics to their partners to accelerate their in vitro diagnostic device (IVD) product development and commercialization.
Proper citation: Genemed (RRID:SCR_000070) Copy
http://www.cogsci.ucsd.edu/media/uploads/grad/grad_fellowship_info.pdf
This resource is a frequently updated listing of graduate student in cognitive science fellowship opportunities. For current opportunities, please see the PDF document.
Proper citation: University of California at San Diego Cognitive Science Graduate Student Fellowship Opportunities (RRID:SCR_000105) Copy
http://www.gobics.de/fabian/treephyler.php
A software tool for fast taxonomic profiling of metagenomes.
Proper citation: Treephyler (RRID:SCR_000109) Copy
http://www.bioconductor.org/packages/2.13/bioc/html/GenomicRanges.html
Software package that defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.
Proper citation: GenomicRanges (RRID:SCR_000025) Copy
Chemical 2D structure editor and viewer application/applet based on the Chemistry Development Kit (CDK).
Proper citation: JChemPaint (RRID:SCR_000095) Copy
A young state university located in the southern part of Portugal.
Proper citation: University of Algarve; Faro; Portugal (RRID:SCR_000006) Copy
http://www.gbiosciences.com/default.aspx
A commercial antibody supplier that provides research materials for projects such as: protein purification, protein analysis, protein estimation assays, DNA purification, plasmid DNA isolation and transformation, protein quantification assays, and coupled assays for methylation. This supplier also provides buffers, reagents, education programs, and training programs.
Proper citation: G Biosciences (RRID:SCR_000007) Copy
An algorithm used to predict and analyse binding modes of docking molecules. Users can search ligand databases for compounds that inhibit enzymatic activity and bind to particular molecules and nucleic acid targets. Molecular docking is used to predict a predominant binding mode(s) of a ligand in three-dimensional structure. This method can be used for molecular biology and computer-assisted drug design.
Proper citation: DOCK (RRID:SCR_000128) Copy
A commercial antibody supplier and provider of various services.
Proper citation: GE Healthcare (RRID:SCR_000004) Copy
http://sourceforge.net/projects/exomesuite/
A software application designed to analyze variant call files from next generation sequencing data to identify variants causing disease.
Proper citation: exomeSuite (RRID:SCR_000129) Copy
https://code.google.com/p/guardd/
MATLAB software designed to organize, automate, and enhance the analytical procedures which operate on CPMG RD NMR data.
Proper citation: GUARDD (RRID:SCR_000040) Copy
http://www.bioconductor.org/packages/release/bioc/html/flowCL.html
Software for semantic labelling of flow cytometric cell populations.
Proper citation: flowCL (RRID:SCR_000046) Copy
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